Clinical plug-ins


BullsEye

BullsEye plug-in shows a BullsEye vectorial image. This image can be manually edited, and saved as PDF or DICOM file.

Vendor: Antoine Rosset

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Image Quality Assessment

This plug-in allows to quantify the difference between two images using two methods such as RMSE (Root Mean Squared Error) and SSIM (Structural Similiarity Index Map). RMSE is is a frequently-used measure of the differences between values predicted by an estimator and the values actually observed. SSIM is a method for measuring the similarity between two images, designed to improve on RMSE.

Vendor: Kyung Sung, Stanford University

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UMMPerfusion

This plug-in calculates the MRI perfusion of an organ for quantitative mapping.

  • Predefines layouts for standard paper and film sizes
  • Move around or delete images
  • Annotation box for quick reports

Vendor: Universitätsmedizin Mannheim

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FusionSync

FusionSync is a hardware-accelerated automatic image-registration algorithm. The fast, reliable and automatic-rigid image fusion allows users to easily view multi-modal and follow-up series together for more efficient diagnoses. Users just drag and drop two series together, then quickly navigate through large amounts of data for easy diagnosis based on spatial synchronization. FusionSync currently supports three-dimensional CT, C-Arm CT, MR, PET and SPECT data.

Vendor: Chimaera GmbH

Part of aycan OsiriX PRO which is CE marked.

CE labelled as medical device

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4D ROI Statistics

This plug-in displays graphs for ROI values within dynamic CT/MRI series (e.g. MRI mammography).

  • 1-N ROIs supported
  • various display options
  • export diagram and ROI images

Vendor: aycan (CE, FDA)

Part of aycan OsiriX PRO which is CE marked and US FDA 510(k) cleared.

CE labelled as medical device    FDA (USA) cleared as a medical device class II

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Calcium Scoring

This plug-in will help you to estimate the calcium score from a cardiac CT.

Vendor: Antoine Rosset

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CMIV CTA

With this plug-in users can analyze the coronaries in a CTA scan. This plug-in is based on a “virtual contrast injection” algorithm, which aims to separate different contrast filled structures or other high intensity structures from each other using the connectivity of the contrast in the vessel lumen.

  • Arbitrary angle 2D Orthogonal MPR
  • Arbitrary angle 2D curved MPR and straightened CPR
  • Interactive vessel segmentation
  • Automatic centerline extraction
  • Segmental Volume Rendering

Vendor: Chungliang Wang, Linköping University

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High Definition Volume Rendering

The plug-in is a software-only technique that delivers high quality DICOM data visualization.

Vendor: Fovia

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Surface Length 3D

With this plug-in the user can measure the length on a 3D surface rendering.

Vendor: Alexandre Amato

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Harmonic Phase Flow

The plug-in is for the estimation of motion in TMR sequences. This algorithm can filter the tagged pattern of the sequences and infer motion data, which is then used for clinical score extraction within a given LV region.

Vendor: Computer Vision Centre

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LungExpert

The plug-in quantifies lung tumors according to RECIST and WHO guidelines and also by their volume. This new integrated solution enables efficient analysis of lesions, including automated quantification of lung tumors.

Vendor: Definiens (CE pending)

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PlanB

With this plug-in the user can design/manipulate objects like points and curves on a surface that represents bone structures.

Vendor: Karlsruhe Institute of Technology

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IB Neuro

FDA cleared IB Neuro™ provides a significant leap in magnetic resonance (MR) perfusion analysis. The technology is based on over 10 years of award winning research. During that time, more than 1,200 perfusion studies were performed in over 700 consenting patients with brain tumors under institutional review board (IRB) approved protocols.

  • Computes and displays a complete set of perfusion maps from dynamic susceptibility contrast MR imaging data
  • Automatically corrects for artifacts in rCBV maps
  • Automatically generates a report with summary statistics

Vendor: Imaging Biometrics (FDA)

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Segmentation

The GPU accelerated segmentation tool allows to segment a ROI with a single click inside a targeting object. The user can perform further refinements by using the OsiriX brush tool to define an area that he wants to belong to the object and regions excluded from the object. This refinement can be done iteratively until the targeting object is segmented precisely. For most objects it is sufficient to define coarsely a region inside and outside an object in one 2D slice to achive a precise 3D segmentation. The resulting segmentation can be managed and exported with the OsiriX ROI manager.

Vendor: Chimaera

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Segmentation

Support for semi automatic segmentation of tumors in fused PET / CT images with several different kinds of region growing algorithms. The plug-in can perform the segmentation on the image itself, or optionally on a registered image, such as a PET image in CT/ PET fused image setup, after which the segmented volume is then mapped back onto the main image. The plug-in also provides methods simple integration with other image processing frameworks.

Vendor: Brian Jensen, Technical University Munich

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ADC Map Calculation

This is a simple OsiriX plug-in that allows you to calculate an ADC map (apparent diffusion coefficient) from images acquired with different diffusion weighting (b values).

  • The plug-in attempts to read b values from image headers.
  • Manual enter the b values for the acquired images in the plug-in
  • Maps are grayscale by default, but you can change the CLUT to make them color (etc).

Vendor: Brian Hargreaves, Stanford University

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Hip Arthroplasty Templating

This OsiriX plug-in has been designed for orthopedic surgeons. It allows the user to perform a filmless on-screen planification based upon an AP pelvis radiographic projection before the implantation of a hip athroplasty. The plug-in, in its actual version, integrates templates for Medacta® hip arthroplasty implants.

  • Select and position implants.
  • Integrates templates for Medacta® hip arthroplasty implants

Vendor: OsiriX Foundation / Medacta

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Fusion Tool

This plug-in will appear in the 'Fusion plug-in' and it allows you to combine two 4D viewers. When combing two viewers, you can limit slice numbers and temporal points for original and dragged viewers.

Vendor: Kyung Sung, Stanford University

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SOVA.evar

SOVA.evar is a medical application plug-in for AAA stentgraft sizing. It allows to size AAA and easily fills out vendor forms.

  • One-click vessel segmentation
  • User friendly interface
  • Integrated Stent-Graft- order forms from different stentgraft manufacturers

Vendor: SOVAmed (CE)

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DCE Tool

This plug-in allows to analyze dynamic contrast enhanced (DCE) MRI data. It offers to measure T1 relaxation using variable flip angles, draw time course curves (signal intensity, relative enhancement, and contrast agent concentration) over the region of interest, and generate pixel-by-pixel semi-quantitative maps (initial slope, area under the curve, and time to peak).

Vendor: Kyung Sung, Stanford University

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EjectionFraction

EjectionFraction

The EjectionFraction plug-in calculates the left ventricel EF according to the "Dodge Correction" method.

  • Named ROIs
  • Visualization of systolic and diastolic measurement
  • Export of results as DICOM file

Vendor: aycan (CE, FDA)

Part of aycan OsiriX PRO which is CE marked and US FDA 510(k) cleared.

CE labelled as medical device    FDA (USA) cleared as a medical device class II

Recist

Recist

The Recist plug-in supports the user for evaluations according RECIST 1.1 guideline.

  • Named ROIs
  • Synchronized visualosation of baseline and followups
  • Tabele of results (single, sum, change)
  • Export of results as DICOM object

Vendor: aycan (CE, FDA)

Part of aycan OsiriX PRO which is CE marked and US FDA 510(k) cleared.

CE labelled as medical device    FDA (USA) cleared as a medical device class II


B1 Map

This plug-in allows to estimate radio-frequency (RF) transmit (B1) field inhomogeneity using various methods such as Bloch-Siegert shift and double angle method.

  • 1-N ROIs supported
  • various display options
  • export diagram and ROI images

Vendor: Kyung Sung, Stanford University

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Edge-Preserving smoothing

This plug-in allows you to smooth your 3D image using ITK edge-preserving filter:

  • Gradient Anisotropic Diffusion
  • Curvature Anisotropic Diffusion
  • Curvature Flow

In addiction it's also possible to apply a Gradient Magnitude and Gaussian smoothing filter to pre-process your images for a better result in segmentation.

Vendor: Carmello de Maria, University Pisa

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inTag

This plug-in is a software that calculates, displays and analyzes myocardial strains and intra-myocardial mechanics from cardiac MR-tagging images.

  • minimal user interactions
  • multiple slice levels and / or orientations processing
  • short-axis and long-axis data analysis
  • automatic segmentation
  • 2D strain calculations displayed as polar maps or multi-box plots
  • saved in the database, export as DICOM, text files, pdf, quicktime

Vendor: CREATIS-LRMN, University Lyon

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CreateROIMask

This OsiriX plug-in 'CreateROIMask' converts rois_series files into 3 dimensional mask saved with the Analyze format.

Vendor: Aurelie Canale, INRIA Sophia Antipolis

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Level-set Segmentation

This plug-in allows you to segment your 3D image using some of ITK level-set algorithms for segmentation:

  • Shape Detection
  • Geodesic Active Contours

Vendor: Carmello de Maria, University Pisa

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SIVIC

The SIVIC plug-in for OsiriX is intended to provide a free, open-source tool for visualizing and processing DICOM MR spectroscopy data from OsiriX.

  • Use OsiriX to manage DICOM MRS data
  • Convert non-DICOM MRS formats to DICOM MRS for import into OsiriX
  • Load DICOM MRS and MRI reference data stored in OsiriX PACS
  • Save DICOM Secondary Captures to OsiriX
  • Process (recon, post-proces, quantify) MRS data

Vendor: Jason Crane

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RAEP

RAEP is an OsiriX plug-in for evaluation of image processing algorithms in a clinical context. It connects plain C/C++ frameworks to the OsiriX project so the researcher can evaluate his/hers algorithms with real world data.

Vendor: Ralf Wickenhöfer

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Ratio T2 Map

This plug-in calculate a T2 map from pre/post contrast T2 images.

Vendor: CMIR Bioinformatics Core, Harvard University

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MiaLite

MiaLite is a general-purpose image segmentation tool using an innovational level set algorithm, which allows you interactively segment various organs or lesions from 2D/3D dataset.

Vendor: CMIV, Linköping

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Cardiac Analysis

This plug-in is based on MeVisLab and provides a flexible toolkit for cardiocascular MRT series.

  • volumetric tool for the left and right ventricles and atria,
  • analysis tool for the myocardium to segment and compare regions of interest in LE, T1, T2 and T2* maps.

Vendor: Fraunhofer MEVIS, Bremen and German Heart Center Berlin

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TubeTK

TubeTK is being developed to host algorithms for applications involving images of tubes, like vessels.

Vendor: Kitware

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Vessel

The Vessel plug-in supports segmentation of vessels in CTA datasets and provides centerlines for vessel assessment.

  • Segementation of CTA vessels
  • Centerlines for curved MPR
  • for all kinds of arteries (e.g.. carotids, coronaries, leg-pelvis, aorta)

Vendor: aycan (CE, FDA)

Part of aycan OsiriX PRO which is CE marked and US FDA 510(k) cleared.

CE labelled as medical device    FDA (USA) cleared as a medical device class II

[read more]


Custom 4D Viewer Plugin

This plug-in will appear in the 'Database plug-in', and it allows you to customize the 4D viewer by limiting the number of slices and time frames.

Vendor: Kyung Sung, Stanford University

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MRU Tool

This plug-in will allow you to produce quantitative functional analysis in MR urography.

Vendor: Kyung Sung, Stanford University

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BoneAge

Bone Age is a tool for radiologists, endocrinologists, and orthopaedic surgeons. It helps in the assessment and monitoring of skeletal age.

Vendor: David Davies-Payne

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CF Score

CF Score is a tool for radiologists and respiratory physicians. It assists in the scoring and monitoring of chest radiographs of patients with cystic fibrosis, using the Brasfield method.

Vendor: David Davies-Payne

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Fetal Growth

Fetal Growth is a tool for professionals involved in pregnancy assessment for monitoring obstetric measurements over time.

Vendor: David Davies-Payne

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Renal Growth

Renal Growth is a tool for radiologists and paediatricians to plot renal length and volume measurements against nomograms for age and weight. It allows for multiple observations from birth to 13 years. Individual patient data files can be stored and reused. Length and volume charts can be exported as JPEG files for importing into a PACS system or other clinical record.

Vendor: David Davies-Payne

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iSix

It allows the user to perform manual and semi-automatic segmentation using: different size brushes, region growing, and livewire segmentation.

iSix is available for free for research purposes.

Vendor: University of Bern - Institute for Surgical Technology & Biomechanics

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Multi-delay ASL

Multi-Delay ASL is an OsiriX plug-in software to analyze multi-delay pseudo-continuous ASL (pCASL) data.

Functions:

  • Analyze pCASL data with multiple postlabeling delays (e.g. PLD=0.5, 1.0, 1.5, 2.0, 2.5 and 3s)
  • Motion correction based on principal component analysis (PCA)
  • Generate multiple images including perfusion weighted and cerebral blood flow (CBF) images at each delay, arterial transit time (ATT), mean CBF and arterial cerebral blood volume (CBV) images
  • ISpatial smoothing with different kernel sizes (typical 0.5-1 pixel)
  • Display color images and export as DICOM, JPEG, TIFF
  • Perform standard ROI analysis

Vendor: transMRI.com

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Cranial Nerves

The plug-in locates cranial nerves nuclei on axial brain stem sequences (for example Ax T2 TSE).

Vendor: Thomas Stefani

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Orthopaedic Studio

It is a plug-in designed to help orthopaedic specialists perform a number of common quantitative hip examinations that are based on standard radiograph images.

Vendor: Spectronic AB

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OrthoView

Pre-operative Planning and Templating.

Vendor: OrthoView LLC

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Manual Segmentation

Simple OsiriX plug-in to manually draw myocardium contours and calculate cavity volumes, stroke volumes and ejection fraction.

Vendor: Konrad

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CINE MRI Strain calculation

Strain calculation using non-rigid image registration algorithm.

Vendor: Konrad

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Shmolli Color Look Up Table

Simple OsiriX plug-in to add Color Look Up Table similar to T1 map ShMOLLI color table used on Siemens scanners ShMOLLI article.

Vendor: Konrad

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Dental3DPlugin

Dental3DPlugin is a free dental implant planning plug-in

Functions:

  • dental implants templates drawing (polygon ROI)
  • implant ROI diameter automatic calculation based upon image analysis algorithm
  • nerve drawing and nerve draw saving
  • IROI are associated with each transverse section position
  • extended zooming tool on the transverse view (double click)
  • ROI Volumes for pilot drills 3D surface rendering
  • implants numbering
  • 3D curve path translation
  • Jpeg image export (transverse Views and/or CPR View)

Vendor: Dr Alexandre Martinet

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CephalometriX

Plug-in allowing 3D cephalometric tracing and treatment planning.

Vendor: Trix Software

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ayDCE

Plug-in for evaluation of multiparametric MRI exams.

  • Individual Hanging Protocols
  • Heatmap of contrast dynamic parameters
  • Documentation with Structured Report and Key Images

Vendor: aycan (CE, FDA)

Part of aycan OsiriX PRO which is CE marked and US FDA 510(k) cleared.

CE labelled as medical device    FDA (USA) cleared as a medical device class II

[read more]